SMTL ID : 6h3h.2 (1 other biounit)

Fab fragment of antibody against fullerene C60

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.27, T.28, R.31, Y.32 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.28, A:T.28, A:T.28 Water bridges: A:R.31, A:R.31, A:R.98 Salt bridges: A:R.31 SO4.4: 2 residues within 4Å: Chain B: R.190, H.191 3 PLIP interactions: 3 interactions with chain B Water bridges: B:Q.160 Salt bridges: B:R.190, B:H.191 SO4.5: 3 residues within 4Å: Chain B: D.154, G.155, S.193 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.193 SO4.6: 3 residues within 4Å: Chain B: T.184, R.186, R.190 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.184 Water bridges: B:R.186 Salt bridges: B:R.190

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain B: R.23, I.69, G.70, D.71, K.72 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.23, B:D.71 GOL.3: 4 residues within 4Å: Chain B: Q.39, K.41, T.47, P.61 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.39, B:K.41, B:T.47 Water bridges: B:R.63, B:R.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipov, E.M. et al., Structure of the Anti-C60 Fullerene Antibody Fab Fragment: Structural Determinants of Fullerene Binding. Acta Naturae (2019)

Release Date

2019-05-15

Peptides

Anti-fullerene antibody Fab fragment Heavy chain: A
Anti-fullerene antibody Fab fragment Light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Anti-fullerene antibody Fab fragment Heavy chain

Anti-fullerene antibody Fab fragment Light chain

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