SMTL ID : 6h7j.2 (1 other biounit)

ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND AGONIST ISOPRENALINE AND NANOBODY Nb80

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x 2CV: HEGA-10(Non-covalent)

2CV.1: 5 residues within 4Å: Chain B: I.25, T.43, C.47, L.55 Ligands: 2CV.4 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.55 2CV.4: 4 residues within 4Å: Chain B: L.40, K.121, I.124 Ligands: 2CV.1 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.124

1 x 5FW: ISOPRENALINE(Non-covalent)

5FW.2: 14 residues within 4Å: Chain B: W.79, T.80, D.83, V.84, V.87, F.163, S.173, S.174, S.177, F.240, F.241, N.244, N.263, Y.267 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:W.79, B:W.79, B:T.80, B:D.83, B:V.84, B:V.84, B:F.163, B:F.240 Hydrogen bonds: B:S.173, B:S.177, B:S.177, B:N.244, B:N.263, B:N.263, B:N.263 pi-Stacking: B:F.241

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain B: C.154, Y.155, D.157, C.160 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:C.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Warne, T. et al., Molecular basis for high-affinity agonist binding in GPCRs. Science (2019)

Release Date

2018-10-17

Peptides

Thioredoxin 1: A
Beta-1 adrenergic receptor: B
Camelid antibody fragment Nb80: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
B

C
D

Membrane

We predict this structure to be a membrane protein.
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Thioredoxin 1

Beta-1 adrenergic receptor

Camelid antibody fragment Nb80

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