SMTL ID : 6h7n.2 (1 other biounit)

ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND PARTIAL AGONIST XAMOTEROL AND NANOBODY Nb6B9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x 2CV: HEGA-10(Non-covalent)

2CV.1: 3 residues within 4Å: Chain B: F.59, R.66, W.71 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.66, B:W.71 2CV.4: 8 residues within 4Å: Chain B: L.40, T.43, S.44, C.47, L.82, K.121, I.124, W.128 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.82, B:W.128 Hydrogen bonds: B:T.43, B:K.121

1 x FVK: ~{N}-[2-[[(2~{S})-2-oxidanyl-3-(4-oxidanylphenoxy)propyl]amino]ethyl]morpholine-4-carboxamide(Non-covalent)

FVK.2: 17 residues within 4Å: Chain B: G.60, V.64, W.79, D.83, V.84, V.87, T.88, V.134, S.173, S.177, W.237, F.240, F.241, V.260, N.263, W.264, Y.267 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:V.84, B:V.87 Hydrogen bonds: B:S.173, B:S.177, B:N.263, B:N.263, B:Y.267, B:Y.267, B:Y.267 pi-Stacking: B:F.241

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain B: S.73, C.154, Y.155, D.157, C.160 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Warne, T. et al., Molecular basis for high affinity agonist binding in GPCRs. Biorxiv (2018)

Release Date

2018-10-17

Peptides

Thioredoxin 1: A
Beta-1 adrenergic receptor: B
Camelid antibody fragment Nb6B9: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
B

C
D

Membrane

We predict this structure to be a membrane protein.
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Thioredoxin 1

Beta-1 adrenergic receptor

Camelid antibody fragment Nb6B9

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