SMTL ID : 6h9w.1

Unraveling the role of the secretor antigen in human rotavirus attachment to histo-blood group antigens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: S.17, D.18, Y.108, G.109, G.110, L.132 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.17, A:S.17, A:G.109, A:G.110 SO4.2: 2 residues within 4Å: Chain A: R.111, N.128 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.128, A:N.128 Water bridges: A:S.126 Salt bridges: A:R.111 SO4.3: 1 residues within 4Å: Chain A: N.128 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.93, A:R.93, A:N.128, A:N.128 SO4.4: 1 residues within 4Å: Chain A: R.111 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.111 Salt bridges: A:R.111

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.5: 4 residues within 4Å: Chain A: F.13, P.16, Y.19, I.145 No protein-ligand interaction detected (PLIP)

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.6: 4 residues within 4Å: Chain A: A.130, N.131, L.132, N.133 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.133 IPA.7: 2 residues within 4Å: Chain A: Y.91, N.92 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.92 Hydrogen bonds: A:N.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gozalbo-Rovira, R. et al., Unraveling the role of the secretor antigen in human rotavirus attachment to histo-blood group antigens. Plos Pathog. (2019)

Release Date

2019-06-12

Peptides

Outer capsid protein VP4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Outer capsid protein VP4

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