SMTL ID : 6hbg.1

Echovirus 18 native particle

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.16 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 17 residues within 4Å: Chain A: I.90, I.92, R.93, F.110, I.112, M.114, I.139, Y.141, P.163, V.165, I.176, I.178, I.181, Y.187, S.188, S.189, F.235 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.90, A:I.90, A:I.92, A:F.110, A:I.112, A:Y.141, A:Y.141, A:Y.141, A:Y.141, A:P.163, A:V.165, A:I.176, A:I.178, A:I.181, A:Y.187, A:Y.187, A:Y.187, A:F.235 Salt bridges: A:R.93

1 x GUN: GUANINE(Non-covalent)

GUN.2: 2 residues within 4Å: Chain B: W.38 Chain D: K.58 3 PLIP interactions: 3 interactions with chain B pi-Stacking: B:W.38 pi-Cation interactions: B:W.38, B:W.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buchta, D. et al., Enterovirus particles expel capsid pentamers to enable genome release. Nat Commun (2019)

Release Date

2019-03-20

Peptides

Echovirus 18 viral protein 1: A
Echovirus 18 viral protein 2: B
Echovirus 18 viral protein 3: C
Echovirus 18 viral protein 4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Echovirus 18 viral protein 1

Echovirus 18 viral protein 2

Echovirus 18 viral protein 3

Echovirus 18 viral protein 4

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