SMTL ID : 7b5f.1

Structure of echovirus 18 in complex with neonatal Fc receptor

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 2.90 Å

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 17 residues within 4Å: Chain A: A.24 Chain C: I.90, I.92, R.93, F.110, I.112, M.114, Y.141, P.163, I.176, I.178, I.181, Y.187, S.188, S.189, M.211, F.235 20 PLIP interactions: 1 interactions with chain A, 19 interactions with chain C Hydrophobic interactions: A:A.24, C:I.90, C:I.90, C:I.92, C:F.110, C:I.112, C:Y.141, C:Y.141, C:Y.141, C:Y.141, C:I.176, C:I.178, C:I.178, C:I.181, C:Y.187, C:Y.187, C:Y.187, C:M.211, C:F.235 Salt bridges: C:R.93

1 x GUN: GUANINE(Non-covalent)

GUN.2: 2 residues within 4Å: Chain D: W.38, Y.248 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:Y.248 pi-Stacking: D:W.38, D:W.38, D:W.38 pi-Cation interactions: D:W.38, D:W.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buchta, D. et al., Structure of echovirus 18 in complex with neonatal Fc receptor. To Be Published

Release Date

2022-01-12

Peptides

Echovirus 18 viral protein 3: A
Echovirus 18 viral protein 4: B
Echovirus 18 viral protein 1: C
Echovirus 18 viral protein 2: D
IgG receptor FcRn large subunit p51: E
Beta-2-microglobulin: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
A

D
B

E
G

F
H

Echovirus 18 viral protein 3

Echovirus 18 viral protein 4

Echovirus 18 viral protein 1

Echovirus 18 viral protein 2

IgG receptor FcRn large subunit p51

Beta-2-microglobulin

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