SMTL ID : 6hf5.1

Crystal Structure of the Acquired VIM-2 Metallo-beta-Lactamase in Complex with ANT-431 Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.83, H.85, H.148 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.83, A:H.85, A:H.148, H2O.1 ZN.2: 5 residues within 4Å: Chain A: D.87, R.88, C.167, H.209 Ligands: G1N.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.87, A:C.167, A:H.209, H2O.1 ZN.3: 3 residues within 4Å: Chain A: H.122 Ligands: ACT.4, ACT.5 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.122, ACT.5

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 7 residues within 4Å: Chain A: R.96, A.101, T.102, T.121, H.122 Ligands: ZN.3, ACT.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.96, A:T.121 Hydrogen bonds: A:T.102 Salt bridges: A:H.122 ACT.5: 4 residues within 4Å: Chain A: A.101, H.122 Ligands: ZN.3, ACT.4 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.122

1 x G1N: 5-(pyridin-3-ylsulfonylamino)-1,3-thiazole-4-carboxylic acid(Non-covalent)

G1N.6: 11 residues within 4Å: Chain A: F.31, Y.36, W.56, D.87, H.148, C.167, R.174, G.178, N.179, H.209 Ligands: ZN.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.174, A:N.179 Water bridges: A:R.174, A:R.174, A:G.178 Salt bridges: A:H.148, A:R.174, A:H.209 pi-Stacking: A:Y.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leiris, S. et al., SAR Studies Leading to the Identification of a Novel Series of Metallo-beta-lactamase Inhibitors for the Treatment of Carbapenem-Resistant Enterobacteriaceae Infections That Display Efficacy in an Animal Infection Model. Acs Infect Dis. (2019)

Release Date

2018-12-05

Peptides

Beta-lactamase class B VIM-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase class B VIM-2

Related Entries With Identical Sequence