SMTL ID : 6hjn.1

Structure of Influenza Hemagglutinin ectodomain (A/duck/Alberta/35/76)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.11 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain A: D.276, N.287 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 1 residues within 4Å: Chain E: N.11 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 2 residues within 4Å: Chain E: D.276, N.287 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 1 residues within 4Å: Chain F: N.11 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 2 residues within 4Å: Chain F: D.276, N.287 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.2: 1 residues within 4Å: Chain A: N.23 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.23 NAG-NAG-FUC.9: 1 residues within 4Å: Chain E: N.23 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:N.23 NAG-NAG-FUC.13: 1 residues within 4Å: Chain F: N.23 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:N.23

3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.3: 6 residues within 4Å: Chain A: N.64, E.66, E.86, N.87, C.90, R.221 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.10: 6 residues within 4Å: Chain E: N.64, E.66, E.86, N.87, C.90, R.221 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.14: 6 residues within 4Å: Chain F: N.64, E.66, E.86, N.87, C.90, R.221 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.5: 2 residues within 4Å: Chain B: E.147, N.154 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.6: 2 residues within 4Å: Chain C: E.147, N.154 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.7: 2 residues within 4Å: Chain D: E.147, N.154 No protein-ligand interaction detected (PLIP)

3 x UPL: UNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID(Non-covalent)

UPL.16: 3 residues within 4Å: Chain B: D.19, W.21, T.49 No protein-ligand interaction detected (PLIP) UPL.17: 3 residues within 4Å: Chain C: D.19, W.21, T.49 No protein-ligand interaction detected (PLIP) UPL.18: 3 residues within 4Å: Chain D: D.19, W.21, T.49 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benton, D.J. et al., Influenza hemagglutinin membrane anchor. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-09-26

Peptides

Hemagglutinin: AEF
Hemagglutinin: BCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
C

F
E

B
B

C
D

D
F

Hemagglutinin

Hemagglutinin

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