SMTL ID : 6hjr.1

Structure of full-length Influenza Hemagglutinin with tilted transmembrane (A/duck/Alberta/35/76[H1N1])

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 1 residues within 4Å: Chain A: N.23 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.23 NAG-NAG-FUC.4: 2 residues within 4Å: Chain C: K.22, N.23 No protein-ligand interaction detected (PLIP) NAG-NAG-FUC.8: 1 residues within 4Å: Chain E: N.23 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:N.23

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 6 residues within 4Å: Chain A: E.66, E.86, N.87, C.90, S.137, R.221 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 6 residues within 4Å: Chain C: N.64, E.66, E.86, N.87, C.90, R.221 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.9: 6 residues within 4Å: Chain E: N.64, E.66, E.86, N.87, C.90, R.221 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.221, E:R.221

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 5 residues within 4Å: Chain B: E.147, E.150, S.151, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 2 residues within 4Å: Chain C: D.276, N.287 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain D: E.147, E.150, S.151, N.154 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 4 residues within 4Å: Chain F: E.147, E.150, S.151, N.154 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.11: 1 residues within 4Å: Chain A: N.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.11 NAG.12: 1 residues within 4Å: Chain A: N.287 No protein-ligand interaction detected (PLIP) NAG.13: 1 residues within 4Å: Chain C: N.11 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.11 NAG.14: 1 residues within 4Å: Chain E: N.11 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.11 NAG.15: 2 residues within 4Å: Chain E: D.276, N.287 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benton, D.J. et al., Influenza hemagglutinin membrane anchor. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-09-26

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin

Hemagglutinin

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