SMTL ID : 6hjp.1

Structure of Influenza Hemagglutinin ectodomain (A/duck/Alberta/35/76) in complex with FISW84 Fab Fragment

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.11 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain A: D.276, N.287 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 1 residues within 4Å: Chain C: N.11 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 2 residues within 4Å: Chain C: D.276, N.287 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 1 residues within 4Å: Chain E: N.11 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 2 residues within 4Å: Chain E: D.276, N.287 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.2: 1 residues within 4Å: Chain A: N.23 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-FUC.7: 1 residues within 4Å: Chain C: N.23 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-FUC.12: 1 residues within 4Å: Chain E: N.23 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.3: 6 residues within 4Å: Chain A: N.64, E.66, E.86, N.87, C.90, R.221 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.8: 6 residues within 4Å: Chain C: N.64, E.66, E.86, N.87, C.90, R.221 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.13: 6 residues within 4Å: Chain E: N.64, E.66, E.86, N.87, C.90, R.221 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.5: 2 residues within 4Å: Chain B: E.147, N.154 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.10: 2 residues within 4Å: Chain D: E.147, N.154 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.15: 2 residues within 4Å: Chain F: E.147, N.154 No protein-ligand interaction detected (PLIP)

3 x UPL: UNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID(Non-covalent)

UPL.16: 3 residues within 4Å: Chain B: I.18, W.21, T.49 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.21 UPL.17: 3 residues within 4Å: Chain D: I.18, W.21, T.49 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:W.21 UPL.18: 3 residues within 4Å: Chain F: I.18, W.21, T.49 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:W.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benton, D.J. et al., Influenza hemagglutinin membrane anchor. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-09-26

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF
Heavy chain of FISW84 Fab Fragment: GIJ
Light chain of FISW84 Fab Fragment: HKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
G

I
I

J
K

H
H

K
J

L
L

Hemagglutinin

Hemagglutinin

Heavy chain of FISW84 Fab Fragment

Light chain of FISW84 Fab Fragment

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