SMTL ID : 6hjq.1

Structure of Full-length Influenza Hemagglutinin (A/duck/Alberta/35/76) in complex with FISW84 Fab Fragment

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.11 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain A: D.276, N.287 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 1 residues within 4Å: Chain I: N.11 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 2 residues within 4Å: Chain I: D.276, N.287 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 1 residues within 4Å: Chain J: N.11 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 2 residues within 4Å: Chain J: D.276, N.287 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.2: 3 residues within 4Å: Chain A: T.15, K.22, N.23 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.15 NAG-NAG-FUC.7: 3 residues within 4Å: Chain I: T.15, K.22, N.23 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:T.15 NAG-NAG-FUC.11: 3 residues within 4Å: Chain J: T.15, K.22, N.23 1 PLIP interactions: 1 interactions with chain J Hydrophobic interactions: J:T.15

3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.3: 6 residues within 4Å: Chain A: N.64, E.66, E.86, N.87, C.90, R.221 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.8: 6 residues within 4Å: Chain I: N.64, E.66, E.86, N.87, C.90, R.221 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.12: 6 residues within 4Å: Chain J: N.64, E.66, E.86, N.87, C.90, R.221 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.5: 4 residues within 4Å: Chain B: E.147, E.150, S.151, N.154 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.147 NAG-NAG-BMA.14: 4 residues within 4Å: Chain K: E.147, E.150, S.151, N.154 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:E.147 NAG-NAG-BMA.15: 4 residues within 4Å: Chain L: E.147, E.150, S.151, N.154 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:E.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benton, D.J. et al., Influenza hemagglutinin membrane anchor. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-09-26

Peptides

Hemagglutinin: AIJ
Hemagglutinin: BKL
Heavy chain of FISW84 Fab: CEF
Light chain of FISW84 Fab: DGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

I
C

J
E

B
B

K
D

L
F

C
G

E
I

F
K

D
H

G
J

H
L

Hemagglutinin

Hemagglutinin

Heavy chain of FISW84 Fab

Light chain of FISW84 Fab

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