SMTL ID : 6hk4.2 (1 other biounit)

Crystal structure of GSK-3B in complex with pyrazine inhibitor C22

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 6 residues within 4Å: Chain A: R.62, R.146, K.171, E.177, N.179, V.180 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.180 Hydrogen bonds: A:V.180 Water bridges: A:R.146 Salt bridges: A:R.62, A:R.62, A:R.146, A:K.171, A:K.171

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Y.22, Y.37, K.52, N.95 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.22 Water bridges: A:Y.22 GOL.3: 7 residues within 4Å: Chain A: Y.106, A.109, R.110, S.113, E.215, G.219, Q.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.113, A:E.215, A:E.215, A:G.219 GOL.4: 4 residues within 4Å: Chain A: R.186, Y.187, G.225, D.226 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.186, A:R.186, A:Y.187, A:Y.187, A:D.226 GOL.5: 6 residues within 4Å: Chain A: R.146, D.147, S.169, Y.182, C.184, S.185 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.147, A:S.169, A:S.169, A:C.184

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 4 residues within 4Å: Chain A: Y.112, L.119, Y.123, Y.127 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.127 pi-Cation interactions: A:Y.123 DMS.7: 5 residues within 4Å: Chain A: T.104, Y.106, R.107, Q.151 Ligands: G8E.9 No protein-ligand interaction detected (PLIP) DMS.8: 6 residues within 4Å: Chain A: I.28, T.104, Q.151, N.152, L.154 Ligands: G8E.9 No protein-ligand interaction detected (PLIP)

1 x G8E: 3-azanyl-6-(4-morpholin-4-ylsulfonylphenyl)-~{N}-pyridin-3-yl-pyrazine-2-carboxamide(Non-covalent)

G8E.9: 17 residues within 4Å: Chain A: K.26, I.28, F.33, V.36, A.49, K.51, V.76, L.98, D.99, Y.100, V.101, P.102, R.107, L.154, D.166 Ligands: DMS.7, DMS.8 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.28, A:K.51, A:D.166 Hydrogen bonds: A:K.26, A:D.99, A:V.101 Water bridges: A:D.166

1 x GLY- SER- HIS- GLY- HIS- HIS- HIS- HIS- HIS: GLY-SER-HIS-GLY-HIS-HIS-HIS-HIS-HIS(Non-covalent)

GLY-SER-HIS-GLY-HIS-HIS-HIS-HIS-HIS.10: 18 residues within 4Å: Chain A: H.139, G.142, L.173, R.175, T.201, S.202, S.203, E.249, R.285, E.288, T.290, P.291, T.292, A.293, R.294, L.295, T.296, E.299 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.201, A:T.201, A:S.202, A:S.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gobbo, D. et al., Investigating Drug-Target Residence Time in Kinases through Enhanced Sampling Simulations. J Chem Theory Comput (2019)

Release Date

2019-07-17

Peptides

Glycogen synthase kinase-3 beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glycogen synthase kinase-3 beta

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