SMTL ID : 6y9r.1

Crystal structure of GSK-3b in complex with the 1H-indazole-3-carboxamide inhibitor 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x OH8: ~{N}-[[1-(2-methoxyethyl)piperidin-4-yl]methyl]-5-(5-propan-2-yloxypyridin-3-yl)-1~{H}-indazole-3-carboxamide(Non-covalent)

OH8.1: 19 residues within 4Å: Chain A: K.26, G.29, N.30, F.33, V.36, A.49, K.51, L.98, D.99, Y.100, V.101, P.102, E.103, T.104, R.107, N.152, L.154, C.165, D.166 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.36, A:A.49, A:L.98, A:Y.100, A:L.154 Hydrogen bonds: A:Y.100, A:V.101, A:V.101, A:V.101 Water bridges: A:D.166

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: R.62, R.146, K.171, N.179, V.180 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.62, A:N.179, A:V.180 Salt bridges: A:R.146, A:K.171

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: T.292, A.293, R.294, T.296, E.299 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.294 GOL.4: 4 residues within 4Å: Chain A: Y.22, Y.37, K.52, N.95 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.22, A:K.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buonfiglio, R. et al., Discovery of Novel Imidazopyridine GSK-3 beta Inhibitors Supported by Computational Approaches. Molecules (2020)

Release Date

2020-05-20

Peptides

Glycogen synthase kinase-3 beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycogen synthase kinase-3 beta

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