SMTL ID : 6hp7.1

ARBITRIUM PEPTIDE RECEPTOR FROM SPBETA PHAGE in complex with 43 mer DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: N.46, E.47, S.183, E.184, M.186 Chain C: G.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.46, A:E.47 Salt bridges: A:K.79 PO4.2: 2 residues within 4Å: Chain A: N.245, E.247 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.247, A:E.247 PO4.3: 5 residues within 4Å: Chain B: Y.159, V.198, R.228, F.229, F.232 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.228 PO4.4: 7 residues within 4Å: Chain B: N.46, E.47, K.79, S.183, E.184, M.186 Chain D: T.14 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.46, B:E.47, B:S.183, B:S.183 Salt bridges: B:K.79 PO4.5: 4 residues within 4Å: Chain C: T.40, G.41 Chain D: T.5, C.6 No protein-ligand interaction detected (PLIP) PO4.6: 3 residues within 4Å: Chain C: C.8 Chain D: T.37, G.38 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gallego Del Sol, F. et al., Deciphering the Molecular Mechanism Underpinning Phage Arbitrium Communication Systems. Mol.Cell (2019)

Release Date

2019-02-13

Peptides

SPBc2 prophage-derived uncharacterized protein YopK: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SPBc2 prophage-derived uncharacterized protein YopK

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