SMTL ID : 6hr1.1 (1 other biounit)

Crystal structure of the YFPnano fusion protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 4 residues within 4Å: Chain A: R.392, K.401, L.402, T.403 7 PLIP interactions: 7 interactions with chain A Water bridges: A:R.392, A:R.392, A:R.392, A:K.401, A:K.401 Salt bridges: A:R.392, A:K.401

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.306, D.308, D.310, T.312, E.317 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.306, A:D.310, A:T.312, A:E.317, H2O.1 CA.3: 5 residues within 4Å: Chain A: D.342, D.344, N.346, T.348, E.353 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.342, A:D.344, A:T.348, A:E.353, H2O.1 CA.4: 5 residues within 4Å: Chain A: D.415, D.417, D.419, Q.421, E.426 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.415, A:Q.421, A:E.426, A:E.426, H2O.2 CA.5: 5 residues within 4Å: Chain A: D.379, D.381, N.383, Y.385, E.390 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.379, A:Y.385, A:E.390, A:E.390, H2O.4

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 3 residues within 4Å: Chain A: R.143, R.156, E.158 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.143, A:E.158 EDO.7: 3 residues within 4Å: Chain A: K.141, R.143, K.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.141

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 5 residues within 4Å: Chain A: K.9, S.303, L.304, G.399, K.401 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.9, A:K.9, A:S.303, A:K.401 GOL.9: 6 residues within 4Å: Chain A: K.135, D.136, N.169, V.210, Q.211, L.212 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.169, A:L.212 GOL.10: 6 residues within 4Å: Chain A: N.198, F.199, K.200, D.214, H.215, Y.216 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.215, A:Y.216 Water bridges: A:N.198, A:N.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collu, G. et al., Chimeric single alpha-helical domains as rigid fusion protein connections for protein nanotechnology and structural biology. Structure (2021)

Release Date

2020-04-08

Peptides

Myosin light chain kinase 2, skeletal/cardiac muscle,Unconventional myosin-X,Green fluorescent protein,Calmodulin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myosin light chain kinase 2, skeletal/cardiac muscle,Unconventional myosin-X,Green fluorescent protein,Calmodulin-1

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