SMTL ID : 6hr1.2 (1 other biounit)

Crystal structure of the YFPnano fusion protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.306, D.308, D.310, T.312, E.317 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.306, A:T.312, A:E.317, A:E.317, H2O.4 CA.2: 5 residues within 4Å: Chain A: D.379, D.381, N.383, Y.385, E.390 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.379, A:D.381, A:Y.385, A:E.390, H2O.6 CA.3: 6 residues within 4Å: Chain A: D.342, D.344, N.346, T.348, D.350, E.353 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.342, A:D.344, A:T.348, A:E.353, A:E.353 CA.4: 5 residues within 4Å: Chain A: D.415, D.417, D.419, Q.421, E.426 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.415, A:Q.421, A:E.426, A:E.426, H2O.2

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 2 residues within 4Å: Chain A: E.145, K.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.147 Water bridges: A:R.156 NA.6: 3 residues within 4Å: Chain A: K.147, E.149, R.156 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.147, A:K.147, A:R.156, A:R.156

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 2 residues within 4Å: Chain A: I.416, Q.429 No protein-ligand interaction detected (PLIP) EDO.8: 3 residues within 4Å: Chain A: R.143, R.156, E.158 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.143, A:R.143 EDO.9: 2 residues within 4Å: Chain A: K.141, E.158 No protein-ligand interaction detected (PLIP) EDO.10: 3 residues within 4Å: Chain A: E.41, K.113, Q.114 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.41 EDO.11: 5 residues within 4Å: Chain A: E.129, R.130, T.131, Y.216, Q.218 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.131, A:T.131, A:Q.218 Water bridges: A:T.142 EDO.12: 3 residues within 4Å: Chain A: E.413, I.416, Q.429 1 PLIP interactions: 1 interactions with chain A Water bridges: A:M.430 EDO.13: 4 residues within 4Å: Chain A: R.372, F.375, R.376, Y.424 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.376, A:R.376

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.14: 2 residues within 4Å: Chain A: E.176, E.206 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.176 GOL.15: 6 residues within 4Å: Chain A: K.135, D.136, N.169, V.210, Q.211, L.212 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.169, A:L.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collu, G. et al., Chimeric single alpha-helical domains as rigid fusion protein connections for protein nanotechnology and structural biology. Structure (2021)

Release Date

2020-04-08

Peptides

Myosin light chain kinase 2, skeletal/cardiac muscle,Unconventional myosin-X,Green fluorescent protein,Calmodulin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Myosin light chain kinase 2, skeletal/cardiac muscle,Unconventional myosin-X,Green fluorescent protein,Calmodulin-1

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