SMTL ID : 6i29.1

X-ray structure of the p53-MDM2 inhibitor NMI801 bound to HDM2 at 2.1A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x H0W: 6-chloranyl-3-[3-[(1~{S})-1-(4-chlorophenyl)ethyl]-5-phenyl-imidazol-4-yl]-~{N}-[2-[4-(2-oxidanylidene-1,3-oxazinan-3-yl)piperidin-1-yl]pyridin-3-yl]-1~{H}-indole-2-carboxamide(Non-covalent)

H0W.1: 13 residues within 4Å: Chain A: L.39, F.40, L.42, G.43, I.46, M.47, Y.52, Q.57, F.71, V.78, H.81, I.84, Y.85 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.42, A:I.46, A:I.46, A:Y.52, A:V.78 Hydrogen bonds: A:L.39 Water bridges: A:F.40 pi-Stacking: A:H.81 Halogen bonds: A:H.81 H0W.2: 13 residues within 4Å: Chain B: L.39, F.40, L.42, G.43, I.46, M.47, Y.52, Q.57, F.71, V.78, H.81, I.84, Y.85 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.42, B:I.46, B:I.46, B:Y.52, B:V.78 Hydrogen bonds: B:L.39 Water bridges: B:F.40 pi-Stacking: B:H.81 Halogen bonds: B:H.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ornstein, J. et al., p53 dynamics vary between tissues and are linked with radiation sensitivity. To be published

Release Date

2019-11-20

Peptides

Human E3 Ubiquitin-Protein Ligase MDM2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Human E3 Ubiquitin-Protein Ligase MDM2

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