SMTL ID : 6i2u.1

Aurora-A kinase domain in complex with Coenzyme A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x COA: COENZYME A(Non-covalent)

COA.1: 25 residues within 4Å: Chain A: L.21, G.22, G.24, K.25, F.26, G.27, N.28, V.29, A.42, K.44, L.46, L.76, L.92, E.93, A.95, T.99, R.102, E.142, N.143, L.145, D.156, C.172, G.173 Ligands: MG.2, MG.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.29 Hydrogen bonds: A:F.26, A:G.27, A:E.93, A:A.95, A:T.99, A:R.102, A:R.102, A:D.156 Water bridges: A:K.44, A:E.142 Salt bridges: A:K.44, A:K.44, A:R.102

4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 3 residues within 4Å: Chain A: D.156, G.158 Ligands: COA.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.156, H2O.1, H2O.1, H2O.1 MG.3: 3 residues within 4Å: Chain A: N.143, D.156 Ligands: COA.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.156, H2O.1 MG.4: 1 residues within 4Å: Chain A: E.212 No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 4 residues within 4Å: Chain A: D.84, A.85, T.86, R.87 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.87 PEG.7: 2 residues within 4Å: Chain A: R.19, R.102 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.19 PEG.8: 3 residues within 4Å: Chain A: L.107, S.108, K.109 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsuchiya, Y. et al., Covalent Aurora A regulation by the metabolic integrator coenzyme A. Redox Biol (2019)

Release Date

2019-10-02

Peptides

Aurora kinase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aurora kinase A

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