SMTL ID : 6z4y.1

Crystal structure of Aurora A (STK6) in complex with macrocycle ODS2003208

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 2 residues within 4Å: Chain A: P.96, S.148 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.148 CIT.2: 8 residues within 4Å: Chain A: G.55, V.56, E.57, H.58, Q.59, R.62, H.162, A.163 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:H.58 Hydrogen bonds: A:E.57, A:H.58, A:A.163 Salt bridges: A:H.58, A:R.62, A:H.162, A:H.162

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: V.56, Q.59, E.63 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.63 EDO.4: 2 residues within 4Å: Chain A: L.12, Y.30 No protein-ligand interaction detected (PLIP) EDO.5: 5 residues within 4Å: Chain A: H.130, K.191, L.194, M.255, L.256 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.130, A:K.191, A:K.191 EDO.6: 4 residues within 4Å: Chain A: P.73, E.93, E.151, K.153 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.93, A:E.151, A:K.153 Water bridges: A:S.148 EDO.7: 4 residues within 4Å: Chain A: L.21, G.98, T.99, R.102 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.99

1 x Q7Q: 6-(2-methoxyethoxy)-11-methyl-8-oxa-2,11,15,19,21,23-hexazatetracyclo[15.6.1.13,7.020,24]pentacosa-1(23),3(25),4,6,17,20(24),21-heptaen-10-one(Non-covalent)

Q7Q.8: 21 residues within 4Å: Chain A: L.21, G.22, K.23, G.24, V.29, A.42, K.44, L.60, L.76, L.90, L.92, E.93, Y.94, A.95, G.98, T.99, E.142, N.143, L.145, A.155, F.157 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.21, A:L.76, A:L.92, A:L.145, A:L.145, A:A.155 Hydrogen bonds: A:K.44, A:A.95, A:A.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of Aurora A (STK6) in complex with macrocycle ODS2003208. To Be Published

Release Date

2020-06-03

Peptides

Aurora kinase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aurora kinase A

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