SMTL ID : 6i64.1

Crystal structure of human ERRg LBD in complex with bisphenol-E

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-dimer

Ligands

2 x H48: 4-[1-(4-hydroxyphenyl)ethyl]phenol(Non-covalent)

H48.1: 13 residues within 4Å: Chain A: L.51, L.54, A.55, E.58, M.89, L.92, R.99, Y.109, L.128, N.129, I.132, A.214, F.218 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.54, A:A.55, A:L.92, A:Y.109, A:A.214, A:F.218, A:F.218 Hydrogen bonds: A:L.92, A:R.99, A:Y.109, A:N.129 Water bridges: A:R.99 pi-Stacking: A:Y.109 H48.5: 13 residues within 4Å: Chain B: L.51, L.54, A.55, E.58, M.89, L.92, R.99, Y.109, L.128, N.129, I.132, A.214, F.218 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.54, B:A.55, B:L.92, B:Y.109, B:A.214, B:F.218, B:F.218 Hydrogen bonds: B:L.92, B:R.99, B:Y.109, B:Y.109, B:N.129 Water bridges: B:R.99 pi-Stacking: B:Y.109

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: K.222, V.227, P.228, M.229, L.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.229, A:M.229 Water bridges: A:K.222, A:G.225 GOL.3: 8 residues within 4Å: Chain A: S.86, E.90, S.160, D.161, R.208, S.211, K.240 Chain B: Q.209 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.160, A:D.161, A:S.211, A:S.211, B:Q.209 Water bridges: A:E.90, A:R.208, A:K.240, A:K.240 GOL.4: 7 residues within 4Å: Chain A: E.28, K.31, G.95, Y.98, R.99, K.146, F.149 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.99, A:K.146, A:K.146 GOL.6: 5 residues within 4Å: Chain B: K.222, V.227, P.228, M.229, L.234 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:M.229, B:M.229 Water bridges: B:K.222, B:G.225 GOL.7: 8 residues within 4Å: Chain A: Q.209 Chain B: S.86, E.90, S.160, D.161, R.208, S.211, K.240 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.160, B:D.161, B:S.211, B:S.211, A:Q.209 Water bridges: B:E.90, B:R.208, B:K.240, B:K.240 GOL.8: 7 residues within 4Å: Chain B: E.28, K.31, G.95, Y.98, R.99, K.146, F.149 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.28, B:R.99, B:K.146, B:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thouennon, E. et al., Insights into the activation mechanism of human estrogen-related receptor gamma by environmental endocrine disruptors. Cell.Mol.Life Sci. (2019)

Release Date

2019-07-03

Peptides

Estrogen-related receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Estrogen-related receptor gamma

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