SMTL ID : 6i66.1

Crystal structure of human ERRg LBD in complex with 4-sec-butylphenol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x H4Q: 4-[(2~{R})-butan-2-yl]phenol(Non-covalent)

H4Q.1: 10 residues within 4Å: Chain A: L.51, A.55, E.58, M.89, L.92, V.96, R.99, Y.109, F.218, F.233 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.92, A:V.96, A:F.218, A:F.218, A:F.233 Hydrogen bonds: A:L.92, A:R.99 Water bridges: A:V.96 pi-Stacking: A:Y.109 H4Q.4: 10 residues within 4Å: Chain B: L.51, A.55, E.58, M.89, L.92, V.96, R.99, Y.109, F.218, F.233 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.92, B:V.96, B:F.218, B:F.218, B:F.233 Hydrogen bonds: B:L.92, B:R.99 Water bridges: B:V.96 pi-Stacking: B:Y.109

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: K.222, G.225, V.227, P.228, M.229, L.234 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.222, A:M.229, A:M.229 Water bridges: A:G.225, A:G.225 GOL.3: 7 residues within 4Å: Chain A: E.28, P.29, G.95, Y.98, R.99, K.146, F.149 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.95, A:R.99, A:K.146, A:K.146 GOL.5: 6 residues within 4Å: Chain B: K.222, G.225, V.227, P.228, M.229, L.234 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.222, B:M.229, B:M.229 Water bridges: B:G.225, B:G.225 GOL.6: 7 residues within 4Å: Chain B: E.28, P.29, G.95, Y.98, R.99, K.146, F.149 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.28, B:G.95, B:R.99, B:K.146, B:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thouennon, E. et al., Insights into the activation mechanism of human estrogen-related receptor gamma by environmental endocrine disruptors. Cell.Mol.Life Sci. (2019)

Release Date

2019-07-03

Peptides

Estrogen-related receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Estrogen-related receptor gamma

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