SMTL ID : 6ic5.1

Human cathepsin-C in complex with dipeptidyl cyclopropyl nitrile inhibitor 2

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
hetero-4-4-4-mer
Ligands
4 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
4 x CL: CHLORIDE ION(Non-functional Binders)
4 x HB5: (2~{S})-2-azanyl-~{N}-[(1~{R},2~{R})-1-(iminomethyl)-2-[4-[4-(4-methylpiperazin-1-yl)sulfonylphenyl]phenyl]cyclopropyl]-3-thiophen-2-yl-propanamide(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Korkmaz, B. et al., Structure-based design and in vivo anti-arthritic activity evaluation of a potent dipeptidyl cyclopropyl nitrile inhibitor of cathepsin C. Biochem. Pharmacol. (2019)
Release Date
2019-04-24
Peptides
Dipeptidyl peptidase 1: ADGJ
Dipeptidyl peptidase 1: BEHK
Dipeptidyl peptidase 1: CFIL
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
D
A
G
A
J
A
B
B
E
B
H
B
K
B
C
C
F
C
I
C
L
C

Dipeptidyl peptidase 1

Toggle Identical (ADGJ)

Dipeptidyl peptidase 1

Toggle Identical (BEHK)

Dipeptidyl peptidase 1

Toggle Identical (CFIL)

Related Entries With Identical Sequence

1k3b.1 | 2djf.1 | 2djg.1 | 4cdc.1 | 4cdc.2 | 4cdc.3 | 4cdc.4 | 4cdd.1 | 4cdd.2 | 4cde.1 | 4cde.2 | 4cdf.1 | 4cdf.2 | 6ic6.1 | 6ic7.1 | 6rn6.1 | 6rn7.1 | 6rn9.1 | 6rne.1 | 6rni.1