SMTL ID : 6idp.1

Crystal structure of Vibrio cholerae MATE transporter VcmN in the straight form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

19 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 9 residues within 4Å: Chain A: I.61, Q.64, V.65, G.144, L.147, Y.148, Y.151, F.200 Ligands: OLC.14 Ligand excluded by PLIP OLC.2: 6 residues within 4Å: Chain A: G.99, I.100, A.103, Y.219, W.221, Q.222 Ligand excluded by PLIP OLC.3: 4 residues within 4Å: Chain A: L.326, Y.329, V.354, I.412 Ligand excluded by PLIP OLC.4: 3 residues within 4Å: Chain A: Y.329, T.333, V.354 Ligand excluded by PLIP OLC.5: 5 residues within 4Å: Chain A: L.318, Q.321, L.322, I.358, G.361 Ligand excluded by PLIP OLC.6: 8 residues within 4Å: Chain A: R.311, C.314, A.362, I.365, G.422, W.423, W.426 Ligands: OLC.19 Ligand excluded by PLIP OLC.7: 7 residues within 4Å: Chain A: I.303, T.304, R.307, Q.430, L.433, R.434, Y.439 Ligand excluded by PLIP OLC.8: 2 residues within 4Å: Chain A: A.424, L.427 Ligand excluded by PLIP OLC.9: 2 residues within 4Å: Chain A: K.83, Y.86 Ligand excluded by PLIP OLC.10: 1 residues within 4Å: Chain A: A.205 Ligand excluded by PLIP OLC.11: 6 residues within 4Å: Chain A: C.397, G.401, Y.405, G.409, I.412, G.413 Ligand excluded by PLIP OLC.12: 4 residues within 4Å: Chain A: F.15, Q.16, W.19, F.23 Ligand excluded by PLIP OLC.13: 6 residues within 4Å: Chain A: F.275, F.278, A.279, V.281, F.320, I.324 Ligand excluded by PLIP OLC.14: 6 residues within 4Å: Chain A: L.28, F.31, Q.32, N.174, F.200 Ligands: OLC.1 Ligand excluded by PLIP OLC.15: 9 residues within 4Å: Chain A: S.8, A.11, K.12, L.14, F.15, T.18, L.22, F.316 Ligands: OLC.16 Ligand excluded by PLIP OLC.16: 2 residues within 4Å: Chain A: F.15 Ligands: OLC.15 Ligand excluded by PLIP OLC.17: 5 residues within 4Å: Chain A: A.106, L.107, Y.110, L.135, W.142 Ligand excluded by PLIP OLC.18: 3 residues within 4Å: Chain A: Y.380, L.383, T.384 Ligand excluded by PLIP OLC.19: 3 residues within 4Å: Chain A: I.419, W.423 Ligands: OLC.6 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kusakizako, T. et al., Structural Basis of H+-Dependent Conformational Change in a Bacterial MATE Transporter. Structure (2019)

Release Date

2019-01-16

Peptides

MATE family efflux transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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MATE family efflux transporter

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