SMTL ID : 6iiw.1

Crystal structure of human UHRF1 PHD finger in complex with PAF15

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.4, C.7, C.15, C.18 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.4, A:C.7, A:C.15, A:C.18 ZN.2: 4 residues within 4Å: Chain A: C.20, C.23, H.43, C.46 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:C.23, A:H.43, A:C.46 ZN.3: 4 residues within 4Å: Chain A: C.35, C.38, C.62, C.65 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.35, A:C.38, A:C.62, A:C.65 ZN.4: 2 residues within 4Å: Chain A: H.21, E.64 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.64, A:E.64

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.5: 6 residues within 4Å: Chain A: G.1, P.2, K.8, D.9, D.10, V.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.10, A:V.11 EPE.6: 4 residues within 4Å: Chain A: E.37, Y.61, C.65, R.66 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishiyama, A. et al., Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nat Commun (2020)

Release Date

2019-10-09

Peptides

E3 ubiquitin-protein ligase UHRF1: A
PCNA-associated factor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase UHRF1

PCNA-associated factor