SMTL ID : 6in1.1

Crystal structure of the first bromodomain of BRD4 in complex with 18-Crown-6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x LOC: N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide(Non-covalent)

LOC.1: 10 residues within 4Å: Chain A: W.48, P.49, F.50, V.54, L.59, L.61, Y.106, N.107, D.111, I.113 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.59, A:L.59, A:L.59, A:L.61, A:L.61, A:I.113 Hydrogen bonds: A:N.107, A:N.107

1 x O4B: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE(Non-covalent)

O4B.2: 7 residues within 4Å: Chain A: Y.32, V.36, T.40, L.123, Q.126, K.127, E.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.40, A:K.127

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: Y.104, I.105, N.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Crown Ethers as Transthyretin Amyloidogenesis Inhibitor. To Be Published

Release Date

2019-10-30

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

Related Entries With Identical Sequence