SMTL ID : 6irl.1

Crystal structure of 8-mer peptide from avian influenza H5N1 virus in complex with BF2*1501

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ARG- ARG- GLU- VAL- HIS- THR- TYR- TYR: ARG-ARG-GLU-VAL-HIS-THR-TYR-TYR(Non-covalent)

ARG-ARG-GLU-VAL-HIS-THR-TYR-TYR.1: 28 residues within 4Å: Chain A: Y.10, D.27, T.37, H.38, Y.61, S.64, E.65, T.68, S.69, R.71, Q.74, I.75, D.76, D.78, T.82, R.86, V.96, L.98, Y.100, S.114, D.116, T.143, K.146, W.147, Y.152, Y.159, W.167, Y.171 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:Y.10, A:Y.61, A:R.71, A:I.75, A:V.96, A:W.147, A:W.147, A:Y.152, A:Y.159, A:Y.159, A:W.167 Hydrogen bonds: A:D.27, A:T.37, A:Y.61, A:E.65, A:Y.100, A:Y.100, A:S.114, A:D.116, A:D.116, A:Y.152, A:Y.152, A:Y.159, A:Y.171 Water bridges: A:Y.10, A:Y.25, A:T.68, A:T.82, A:W.147, A:G.155, A:W.167 Salt bridges: A:D.27, A:E.65, A:E.65, A:R.86, A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., Structures of the MHC-I molecule BF2*1501 disclose the preferred presentation of an H5N1 virus-derived epitope. J.Biol.Chem. (2020)

Release Date

2020-03-18

Peptides

MHC class I molecule: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I molecule

Beta-2-microglobulin

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