SMTL ID : 6itv.1

Crystal structure of activated c-KIT in complex with compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-dimer

Ligands

2 x AWO: N-(5-ethyl-1,2-oxazol-3-yl)-N'-[4-(2-{[6-(4-ethylpyrazin-1(4H)-yl)pyrimidin-4-yl]amino}-1,3-thiazol-5-yl)phenyl]urea(Non-covalent)

AWO.1: 18 residues within 4Å: Chain A: L.49, A.75, K.77, E.94, L.98, I.107, T.124, E.125, Y.126, C.127, C.128, G.130, L.195, I.204, C.205, D.206, F.207 Chain B: D.156 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.75, A:L.98, A:I.107, A:Y.126, A:I.204 Hydrogen bonds: A:E.94, A:E.94, A:E.94, A:C.127, A:C.127, A:D.206 Water bridges: A:D.131 pi-Stacking: A:F.207 AWO.2: 18 residues within 4Å: Chain A: D.156 Chain B: L.49, A.75, K.77, E.94, L.98, I.107, T.124, E.125, Y.126, C.127, C.128, G.130, L.195, I.204, C.205, D.206, F.207 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:A.75, B:L.98, B:I.107, B:Y.126, B:I.204 Hydrogen bonds: B:E.94, B:E.94, B:C.127, B:C.127, B:D.206 Water bridges: B:D.131, B:D.206 pi-Stacking: B:F.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, T.S. et al., Crystal structure of activated c-KIT in complex with compound. To Be Published

Release Date

2019-11-27

Peptides

Mast/stem cell growth factor receptor Kit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Mast/stem cell growth factor receptor Kit

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