SMTL ID : 6kla.1

Crystal structure of human c-KIT kinase domain in complex with compound 15a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-dimer

Ligands

2 x DJX: N-[6-(4-ethylpiperazin-1-yl)-2-methyl-pyrimidin-4-yl]-5-pyridin-4-yl-1,3-thiazol-2-amine(Non-covalent)

DJX.1: 14 residues within 4Å: Chain A: L.49, A.75, K.77, V.108, T.124, E.125, Y.126, C.127, C.128, G.130, L.195, D.206, F.207 Chain B: D.156 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.108, A:Y.126, A:L.195, A:F.207 Hydrogen bonds: A:C.127, A:C.127 pi-Stacking: A:F.207 DJX.2: 14 residues within 4Å: Chain A: D.156 Chain B: L.49, A.75, K.77, V.108, T.124, E.125, Y.126, C.127, C.128, G.130, L.195, D.206, F.207 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.108, B:Y.126, B:L.195, B:F.207 Hydrogen bonds: B:C.127, B:C.127 pi-Stacking: B:F.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, W.H. et al., Identification of a Multitargeted Tyrosine Kinase Inhibitor for the Treatment of Gastrointestinal Stromal Tumors and Acute Myeloid Leukemia. J.Med.Chem. (2019)

Release Date

2019-11-27

Peptides

Mast/stem cell growth factor receptor Kit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Mast/stem cell growth factor receptor Kit

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