SMTL ID : 6iwn.1

Structural insight into probable lipid transfer mechanism of non-specific lipid transfer protein via intermediate structures in Solanum melongena

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

homo-dimer

Ligands

2 x MYR: MYRISTIC ACID(Non-covalent)(Non-functional Binders)

MYR.1: 4 residues within 4Å: Chain A: A.12, P.13, P.16 Ligands: GOL.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.16 MYR.6: 1 residues within 4Å: Ligands: TRS.7 No protein-ligand interaction detected (PLIP)

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 3 residues within 4Å: Chain A: G.25, A.26, A.27 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.26, A:A.27 TRS.7: 2 residues within 4Å: Chain B: A.12 Ligands: MYR.6 No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Ligands: MYR.1, GOL.4, GOL.5 No protein-ligand interaction detected (PLIP) GOL.4: 4 residues within 4Å: Chain A: P.16, Q.20 Ligands: GOL.3, GOL.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.20 GOL.5: 2 residues within 4Å: Ligands: GOL.3, GOL.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Madni, Z.K. et al., Structural insights into the lipid transfer mechanism of a non-specific lipid transfer protein. Plant J. (2020)

Release Date

2019-12-11

Peptides

Non-specific lipid-transfer protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Non-specific lipid-transfer protein

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