SMTL ID : 6izm.1

Crystal structure of the PPARgamma-LBD complexed with compound 1l

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x B0X: 3-[[6-(2,6-dimethylpyridin-3-yl)oxy-1-methyl-benzimidazol-2-yl]methoxy]benzoic acid(Non-covalent)

B0X.1: 17 residues within 4Å: Chain A: I.55, G.64, F.70, R.86, I.87, G.90, C.91, R.94, S.95, Y.133, L.136, I.147, M.154, F.169, M.170, K.173, H.255 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.55, A:F.70, A:I.87, A:R.94, A:L.136, A:I.147 Salt bridges: A:K.173, A:H.255 pi-Stacking: A:F.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shinozuka, T. et al., Structure-Activity Relationship Studies of 3- or 4-Pyridine Derivatives of DS-6930. Acs Med.Chem.Lett. (2019)

Release Date

2019-03-27

Peptides

Peroxisome proliferator-activated receptor gamma: A
Peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Peroxisome proliferator-activated receptor gamma

Peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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