SMTL ID : 8bf2.1 (1 other biounit)

Human PPARgamma in complex with MEHP bound to the AF-2 and omega sub-pockets

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

2 x QGL: 2-[(2~{S})-2-ethylhexoxy]carbonylbenzoic acid(Non-covalent)

QGL.1: 20 residues within 4Å: Chain A: F.88, C.91, Q.92, R.94, S.95, A.98, H.129, I.132, Y.133, L.136, V.145, I.147, L.159, F.169, M.170, H.255, L.259, L.275, Y.279 Ligands: QGL.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.88, A:F.88, A:Q.92, A:R.94, A:I.132, A:L.136, A:V.145, A:F.169 Hydrogen bonds: A:S.95, A:Y.133, A:Y.279, A:Y.279 Salt bridges: A:H.129, A:H.255, A:H.255 pi-Stacking: A:H.255 QGL.2: 16 residues within 4Å: Chain A: L.34, L.61, I.87, G.90, C.91, F.93, R.94, E.97, L.139, L.146, I.147, S.148, E.149, G.150, M.154 Ligands: QGL.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.87, A:F.93, A:E.149 Hydrogen bonds: A:G.90, A:S.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Useini, A. et al., Structural basis of the activation of PPAR gamma by the plasticizer metabolites MEHP and MINCH. Environ Int (2023)

Release Date

2023-03-08

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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