SMTL ID : 6j4q.1 (3 other biounits)

Structural basis of tubulin detyrosination by vasohibins-SVBP enzyme complex and functional implications

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

2 x TQ8: N-[(2S)-4-chloro-3-oxo-1-phenyl-butan-2-yl]-4-methyl-benzenesulfonamide(Covalent)

TQ8.1: 10 residues within 4Å: Chain A: Y.78, C.113, F.146, H.147, H.148, S.165, R.166, R.167, L.170, H.196 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.146, A:F.146, A:R.167, A:L.170 Hydrogen bonds: A:Y.78, A:H.148, A:R.166, A:R.166 TQ8.4: 6 residues within 4Å: Chain A: E.169, K.193, Y.194 Chain B: F.54, D.55, C.58 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.193, A:Y.194

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: K.74, A.168, D.172 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.172 GOL.3: 4 residues within 4Å: Chain A: K.90, S.136, H.147, H.148 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, N. et al., Structural basis of tubulin detyrosination by the vasohibin-SVBP enzyme complex. Nat.Struct.Mol.Biol. (2019)

Release Date

2019-05-01

Peptides

Tubulinyl-Tyr carboxypeptidase 2: A
Small vasohibin-binding protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tubulinyl-Tyr carboxypeptidase 2

Small vasohibin-binding protein

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