SMTL ID : 6j4s.1

Structural basis of tubulin detyrosination by vasohibins-SVBP enzyme complex and functional implications

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: E.176, V.252, P.253, H.254, E.255 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.176, A:H.254, A:H.254, A:E.255 GOL.2: 8 residues within 4Å: Chain A: K.119, Y.123, H.125, S.210, R.211, R.212, A.213, M.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.125, A:R.211 Water bridges: A:Y.123 GOL.3: 4 residues within 4Å: Chain A: H.193, R.211, R.212, H.241 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.241 Water bridges: A:R.211, A:Y.236, A:Y.236

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: K.183, H.192, K.245, K.247 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:K.183, A:H.192, A:K.245, A:K.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, N. et al., Structural basis of tubulin detyrosination by the vasohibin-SVBP enzyme complex. Nat.Struct.Mol.Biol. (2019)

Release Date

2019-05-01

Peptides

Tubulinyl-Tyr carboxypeptidase 2: A
Small vasohibin-binding protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tubulinyl-Tyr carboxypeptidase 2

Small vasohibin-binding protein

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