SMTL ID : 6j4v.1

Structural basis of tubulin detyrosination by vasohibins-SVBP enzyme complex and functional implications

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: R.57, S.59 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.59 Water bridges: A:S.59, A:S.59 Salt bridges: A:R.57 PO4.2: 4 residues within 4Å: Chain A: K.138, H.147, K.200, K.202 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:K.138, A:H.147, A:K.200, A:K.202

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: W.18, W.22, R.40, N.41 Chain B: R.34, E.38 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.40, A:R.40 Water bridges: A:W.18 GOL.4: 7 residues within 4Å: Chain A: K.74, Y.78, S.165, R.166, R.167, A.168, M.171 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.74, A:Y.78, A:R.167, A:A.168 GOL.5: 6 residues within 4Å: Chain A: P.48, S.49, P.51, T.75, Q.77 Chain B: Y.40 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.49, A:T.75, A:Q.77 Water bridges: A:S.49, A:S.49, B:R.36 GOL.6: 4 residues within 4Å: Chain A: V.53, P.54, N.55, Y.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.54 Water bridges: A:N.55, A:L.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, N. et al., Structural basis of tubulin detyrosination by the vasohibin-SVBP enzyme complex. Nat.Struct.Mol.Biol. (2019)

Release Date

2019-05-01

Peptides

Tubulinyl-Tyr carboxypeptidase 2: A
Small vasohibin-binding protein: B
Tubulin alpha-1B chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Tubulinyl-Tyr carboxypeptidase 2

Small vasohibin-binding protein

Tubulin alpha-1B chain

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