SMTL ID : 6j7x.1

Complex of GGTaseIII, farnesyl-Ykt6, and GGPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GRG: GERANYLGERANYL DIPHOSPHATE(Non-covalent)

GRG.1: 22 residues within 4Å: Chain A: K.135, S.193, Y.195, N.196 Chain B: Y.56, L.101, Q.108, R.149, F.152, C.153, H.195, G.197, Q.198, Y.200, C.201, R.237, K.240, Y.246, W.248, W.249, F.298, C.319 14 PLIP interactions: 10 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:L.101, B:R.149, B:F.152, B:W.249, B:W.249, B:F.298, A:Y.195 Salt bridges: B:H.195, B:R.237, B:K.240, B:K.240, A:K.135, A:K.135 Hydrogen bonds: A:Y.195

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: P.137, E.138, I.141 Chain B: R.149 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.138, B:R.149, B:R.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goto-Ito, S. et al., Complex of GGTaseIII, farnesyl-Ykt6 (C-terminal methylated), and GGPP. To Be Published

Release Date

2020-01-22

Peptides

Protein prenyltransferase alpha subunit repeat-containing protein 1: A
Geranylgeranyl transferase type-2 subunit beta: B
Synaptobrevin homolog YKT6: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Protein prenyltransferase alpha subunit repeat-containing protein 1

Geranylgeranyl transferase type-2 subunit beta

Synaptobrevin homolog YKT6

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