- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-12-mer
- Ligands
- 24 x MG: MAGNESIUM ION(Non-covalent)
- 12 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)(Covalent)
NDP.3: 22 residues within 4Å:- Chain A: G.22, Y.23, G.24, N.25, Q.26, N.45, V.46, D.48, Y.50, L.77, I.78, P.79, D.80, V.82, V.86, A.106, S.107, P.129, R.130, M.131
- Chain B: H.253
- Ligands: 9TY.4
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Y.23, A:N.25, A:N.25, A:Q.26, A:N.45, A:I.78
NDP.7: 20 residues within 4Å:- Chain B: G.22, Y.23, G.24, N.25, Q.26, N.45, V.46, D.48, Y.50, L.77, I.78, P.79, V.82, V.86, A.106, S.107, P.129, R.130, V.132
- Ligands: 9TY.8
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Y.23, B:N.25, B:N.25, B:Q.26, B:N.45, B:I.78
NDP.10: 22 residues within 4Å:- Chain C: G.22, Y.23, G.24, N.25, Q.26, N.45, V.46, D.48, Y.50, L.77, I.78, P.79, D.80, V.82, V.86, A.106, S.107, P.129, R.130, M.131, V.132
- Ligands: 9TY.11
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:Y.23, C:N.25, C:N.45, C:V.46, C:I.78, C:S.107
NDP.15: 22 residues within 4Å:- Chain D: G.22, Y.23, G.24, N.25, Q.26, N.45, V.46, D.48, Y.50, L.77, I.78, P.79, D.80, V.82, V.86, A.106, S.107, P.129, R.130, M.131, V.132
- Ligands: 9TY.16
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:Y.23, D:N.25, D:N.25, D:Q.26, D:N.45, D:V.46, D:V.46, D:I.78
NDP.18: 25 residues within 4Å:- Chain E: G.22, Y.23, G.24, N.25, Q.26, N.45, V.46, D.48, Y.50, Y.51, L.77, I.78, P.79, D.80, V.82, V.86, A.106, S.107, P.129, R.130, M.131, V.132
- Chain F: H.253, S.254
- Ligands: 9TY.19
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:Y.23, E:N.25, E:Q.26, E:N.45, E:V.46, E:I.78
NDP.23: 25 residues within 4Å:- Chain E: H.252, H.253
- Chain F: G.22, Y.23, G.24, N.25, Q.26, N.45, V.46, D.48, Y.50, L.77, I.78, P.79, D.80, V.82, E.85, V.86, A.106, S.107, P.129, M.131, V.132, G.133
- Ligands: 9TY.24
7 PLIP interactions:7 interactions with chain F- Hydrogen bonds: F:Y.23, F:N.25, F:N.25, F:Q.26, F:N.45, F:V.46, F:I.78
NDP.26: 21 residues within 4Å:- Chain G: G.22, Y.23, G.24, N.25, Q.26, N.45, V.46, D.48, Y.50, L.77, I.78, P.79, V.82, E.85, V.86, A.106, S.107, M.131, V.132
- Chain H: H.253
- Ligands: 9TY.27
8 PLIP interactions:6 interactions with chain G, 2 interactions with chain H- Hydrogen bonds: G:Y.23, G:N.25, G:Q.26, G:Q.26, G:N.45, G:V.46, H:H.253
- Water bridges: H:S.254
NDP.31: 23 residues within 4Å:- Chain H: G.22, Y.23, G.24, N.25, Q.26, N.45, V.46, D.48, Y.50, L.77, I.78, P.79, D.80, V.82, E.85, V.86, A.106, S.107, P.129, R.130, M.131, V.132
- Ligands: 9TY.32
7 PLIP interactions:7 interactions with chain H- Hydrogen bonds: H:Y.23, H:N.25, H:Q.26, H:N.45, H:V.46, H:I.78
- Water bridges: H:D.80
NDP.34: 22 residues within 4Å:- Chain I: G.22, Y.23, G.24, N.25, Q.26, N.45, V.46, D.48, Y.50, L.77, I.78, P.79, V.82, E.85, V.86, A.106, S.107, P.129, R.130, M.131, V.132
- Ligands: 9TY.35
7 PLIP interactions:7 interactions with chain I- Hydrogen bonds: I:Y.23, I:N.25, I:N.25, I:Q.26, I:N.45, I:V.46, I:I.78
NDP.39: 23 residues within 4Å:- Chain J: G.22, Y.23, G.24, N.25, Q.26, N.45, V.46, D.48, Y.50, L.77, I.78, P.79, D.80, V.82, E.85, V.86, A.106, S.107, P.129, R.130, M.131, V.132
- Ligands: 9TY.40
6 PLIP interactions:6 interactions with chain J- Hydrogen bonds: J:Y.23, J:N.25, J:N.25, J:N.45, J:V.46, J:I.78
NDP.42: 21 residues within 4Å:- Chain K: G.22, Y.23, G.24, N.25, Q.26, N.45, V.46, D.48, Y.50, L.77, I.78, P.79, V.82, V.86, A.106, S.107, P.129, R.130, M.131
- Chain L: H.253
- Ligands: 9TY.43
8 PLIP interactions:8 interactions with chain K- Hydrogen bonds: K:Y.23, K:N.25, K:N.25, K:Q.26, K:N.45, K:V.46, K:V.46, K:I.78
NDP.48: 23 residues within 4Å:- Chain L: G.22, Y.23, G.24, N.25, Q.26, N.45, V.46, D.48, Y.50, L.77, I.78, P.79, D.80, V.82, E.85, V.86, A.106, S.107, P.129, R.130, M.131, V.132
- Ligands: 9TY.45
7 PLIP interactions:7 interactions with chain L- Hydrogen bonds: L:Y.23, L:N.25, L:N.25, L:Q.26, L:N.45, L:V.46, L:I.78
- 12 x 9TY: cyclopropane-1,1-dicarboxylic acid(Non-covalent)(Covalent)
9TY.4: 8 residues within 4Å:- Chain A: R.130, D.191, E.195
- Chain B: S.254, S.257
- Ligands: MG.1, MG.2, NDP.3
No protein-ligand interaction detected (PLIP)9TY.8: 10 residues within 4Å:- Chain A: S.254, T.256, S.257
- Chain B: S.107, R.130, D.191, E.195
- Ligands: MG.5, MG.6, NDP.7
No protein-ligand interaction detected (PLIP)9TY.11: 10 residues within 4Å:- Chain C: S.107, R.130, D.191, E.195
- Chain D: S.254, T.256, S.257
- Ligands: MG.9, NDP.10, MG.13
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:D.191, D:S.254, D:S.257
9TY.16: 11 residues within 4Å:- Chain C: E.233, S.254, T.256, S.257
- Chain D: S.107, R.130, D.191, E.195
- Ligands: MG.12, MG.14, NDP.15
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:D.191, C:E.233
9TY.19: 9 residues within 4Å:- Chain E: R.130, D.191, E.195
- Chain F: E.227, S.254, S.257
- Ligands: MG.17, NDP.18, MG.20
6 PLIP interactions:3 interactions with chain F, 3 interactions with chain E- Hydrogen bonds: F:S.254, F:S.257, F:S.257, E:R.130, E:D.191, E:E.195
9TY.24: 10 residues within 4Å:- Chain E: E.227, S.257
- Chain F: S.107, R.130, D.191, S.194, E.195
- Ligands: MG.21, MG.22, NDP.23
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:S.257, F:D.191
9TY.27: 10 residues within 4Å:- Chain G: S.107, R.130, D.191, E.195
- Chain H: E.227, E.233, S.257
- Ligands: MG.25, NDP.26, MG.29
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:D.191
- Salt bridges: G:R.130
9TY.32: 9 residues within 4Å:- Chain G: S.254, S.257
- Chain H: S.107, R.130, D.191, E.195
- Ligands: MG.28, MG.30, NDP.31
3 PLIP interactions:1 interactions with chain H, 2 interactions with chain G- Hydrogen bonds: H:D.191, G:S.254, G:S.254
9TY.35: 9 residues within 4Å:- Chain I: S.107, R.130, D.191, E.195
- Chain J: S.254, T.256, S.257
- Ligands: MG.33, NDP.34
4 PLIP interactions:3 interactions with chain J, 1 interactions with chain I- Hydrogen bonds: J:S.254, J:S.257, J:S.257, I:R.130
9TY.40: 8 residues within 4Å:- Chain I: S.257
- Chain J: S.107, R.130, D.191, E.195
- Ligands: MG.36, MG.38, NDP.39
1 PLIP interactions:1 interactions with chain I- Water bridges: I:S.254
9TY.43: 9 residues within 4Å:- Chain K: S.107, R.130, D.191, E.195
- Chain L: S.254, T.256, S.257
- Ligands: MG.41, NDP.42
3 PLIP interactions:1 interactions with chain K, 2 interactions with chain L- Hydrogen bonds: K:R.130, L:S.254, L:S.257
9TY.45: 10 residues within 4Å:- Chain K: S.254, T.256, S.257
- Chain L: S.107, R.130, D.191, E.195
- Ligands: MG.44, MG.47, NDP.48
3 PLIP interactions:1 interactions with chain K, 2 interactions with chain L- Hydrogen bonds: K:S.254, L:D.191, L:D.191
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, C.Y. et al., Use of Cryo-EM To Uncover Structural Bases of pH Effect and Cofactor Bispecificity of Ketol-Acid Reductoisomerase. J. Am. Chem. Soc. (2019)
- Release Date
- 2019-04-17
- Peptides
- Putative ketol-acid reductoisomerase 2: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-12-mer
- Ligands
- 24 x MG: MAGNESIUM ION(Non-covalent)
- 12 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)(Covalent)
- 12 x 9TY: cyclopropane-1,1-dicarboxylic acid(Non-covalent)(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, C.Y. et al., Use of Cryo-EM To Uncover Structural Bases of pH Effect and Cofactor Bispecificity of Ketol-Acid Reductoisomerase. J. Am. Chem. Soc. (2019)
- Release Date
- 2019-04-17
- Peptides
- Putative ketol-acid reductoisomerase 2: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L