SMTL ID : 6jiz.1 (1 other biounit)

Apo structure of an imine reductase at 1.76 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: Q.73, Y.76, V.101 Ligands: NH4.5 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.72, A:Y.76 ACT.2: 2 residues within 4Å: Chain A: Q.73, Y.76 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.76 Hydrogen bonds: A:Q.73 Water bridges: A:Y.76 ACT.3: 2 residues within 4Å: Chain A: F.136, R.158 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.158 ACT.7: 4 residues within 4Å: Chain B: Q.73, Y.76, V.101 Ligands: NH4.11 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Y.72, B:Y.76 ACT.8: 2 residues within 4Å: Chain B: Q.73, Y.76 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.76 Hydrogen bonds: B:Q.73 Water bridges: B:Y.76 ACT.9: 2 residues within 4Å: Chain B: F.136, R.158 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.158

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: L.225, A.241, W.287 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: L.225, A.241, W.287 Ligand excluded by PLIP

2 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.5: 2 residues within 4Å: Chain A: E.104 Ligands: ACT.1 No protein-ligand interaction detected (PLIP) NH4.11: 2 residues within 4Å: Chain B: E.104 Ligands: ACT.7 No protein-ligand interaction detected (PLIP)

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 3 residues within 4Å: Chain A: L.69, T.70, A.74 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.70, A:T.70 Water bridges: A:R.36, A:R.36, A:R.36 NA.12: 3 residues within 4Å: Chain B: L.69, T.70, A.74 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.70, B:T.70 Water bridges: B:R.36, B:R.36, B:R.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, H. et al., Apo structure of an imine reductase at 1.76 Angstrom resolution. To Be Published

Release Date

2020-02-26

Peptides

6-phosphogluconate dehydrogenase NAD-binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

6-phosphogluconate dehydrogenase NAD-binding protein

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