SMTL ID : 6jiz.2 (1 other biounit)

Apo structure of an imine reductase at 1.76 Angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: L.231, A.232, G.234, Y.291, E.292, K.295 Chain B: E.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.292 Salt bridges: A:K.295 ACT.2: 3 residues within 4Å: Chain A: Q.73, Y.76, V.101 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.72, A:D.97 ACT.3: 3 residues within 4Å: Chain A: R.229, N.235, P.237 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.237 Water bridges: A:R.229, A:R.229 Salt bridges: A:R.229 ACT.9: 3 residues within 4Å: Chain B: Q.73, Y.76, V.101 3 PLIP interactions: 3 interactions with chain B Water bridges: B:Y.72, B:D.97, B:D.97

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: R.103, L.169 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: R.229 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: G.261 Chain B: K.296, K.297 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: E.83, W.108, K.111, H.112 Ligand excluded by PLIP

1 x LW9: 3-ethylheptane(Non-covalent)

LW9.6: 11 residues within 4Å: Chain A: L.225, A.241, M.245, M.246 Chain B: M.122, T.123, P.124, Y.171, L.175, F.178 Ligands: NAP.8 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.225, A:A.241, B:L.175, B:F.178

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 3 residues within 4Å: Chain A: K.296, K.297 Chain B: G.261 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.261, A:K.297

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.8: 29 residues within 4Å: Chain A: L.240, A.241, T.242, M.245, T.249 Chain B: G.12, L.13, G.14, P.15, M.16, N.35, R.36, T.37, R.40, S.68, L.69, T.70, A.74, D.77, I.78, L.94, S.95, S.96, V.121, T.123, P.124, A.125, Y.171 Ligands: LW9.6 27 PLIP interactions: 23 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:L.13, B:G.14, B:M.16, B:N.35, B:R.36, B:T.37, B:L.69, B:T.70, B:T.70, B:D.77, B:S.96, B:A.125, A:L.240, A:T.242, A:T.249 Water bridges: B:G.17, B:R.36, B:R.36, B:T.37, B:T.37, B:R.40, B:R.40, A:T.249 Salt bridges: B:R.36, B:R.40 pi-Cation interactions: B:R.36, B:R.36

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.12: 3 residues within 4Å: Chain B: Q.18, R.40, P.43 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.18, B:R.40, B:R.40 EDO.13: 2 residues within 4Å: Chain B: Q.73, Y.76 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.73 Water bridges: B:Y.76, B:D.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, H. et al., Apo structure of an imine reductase at 1.76 Angstrom resolution. To Be Published

Release Date

2020-02-26

Peptides

6-phosphogluconate dehydrogenase NAD-binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

6-phosphogluconate dehydrogenase NAD-binding protein

Related Entries With Identical Sequence