SMTL ID : 6jmq.1

LAT1-CD98hc complex bound to MEM-108 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain B: E.352, N.353, N.382 No protein-ligand interaction detected (PLIP)

5 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 6 residues within 4Å: Chain A: L.156, P.159, V.329, L.333, F.336 Ligands: CLR.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.159, A:V.329, A:L.333, A:F.336 CLR.3: 10 residues within 4Å: Chain A: E.169, K.172, L.173, V.382, L.385, L.386, A.388, F.389 Chain B: M.197 Ligands: CLR.5 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.173, A:V.382, A:L.385, A:L.386, A:A.388, A:F.389 CLR.4: 7 residues within 4Å: Chain A: L.386, Y.387, F.389, S.390, E.457, I.460, I.464 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.386, A:L.386, A:F.389, A:E.457, A:I.460, A:I.460, A:I.464 CLR.5: 6 residues within 4Å: Chain A: C.187, V.378, L.385 Chain B: L.187, F.190 Ligands: CLR.3 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.187, B:F.190, A:V.378, A:L.385 CLR.6: 9 residues within 4Å: Chain A: L.156, L.177, L.181, F.336 Chain B: W.194, V.202, I.205, R.210 Ligands: CLR.2 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:L.156, A:L.177, A:L.181, A:F.336, B:W.194, B:V.202, B:I.205 Hydrogen bonds: B:R.210, B:R.210

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 1 residues within 4Å: Chain B: N.425 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.425 NAG.8: 1 residues within 4Å: Chain B: N.507 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.507 NAG.9: 1 residues within 4Å: Chain B: N.366 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, Y. et al., Cryo-EM structure of the human L-type amino acid transporter 1 in complex with glycoprotein CD98hc. Nat.Struct.Mol.Biol. (2019)

Release Date

2019-06-19

Peptides

Large neutral amino acids transporter small subunit 1: A
4F2 cell-surface antigen heavy chain: B
Antibody: C
Antibody: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Large neutral amino acids transporter small subunit 1

4F2 cell-surface antigen heavy chain

Antibody

Antibody

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