SMTL ID : 6jmx.1

Structure of open form of peptidoglycan peptidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.149, D.153, H.230 Ligands: TAR.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.149, A:D.153, A:D.153, A:H.230

1 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.2: 10 residues within 4Å: Chain A: H.149, D.153, H.197, R.223, V.224, S.225, H.228, H.230 Ligands: ZN.1, GOL.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.223, A:S.225, A:H.228 Salt bridges: A:H.149, A:H.228, A:H.230

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: S.150, F.178, A.179, Y.196, H.197, R.223, H.230 Ligands: TAR.2, GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.150, A:S.150, A:F.178, A:R.223 GOL.4: 6 residues within 4Å: Chain A: Y.110, R.176, Q.194, Y.196, Q.239 Ligands: GOL.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.176, A:R.176, A:Q.194, A:Y.196 Water bridges: A:S.150, A:Q.194 GOL.5: 4 residues within 4Å: Chain A: K.49, S.147, Y.148, S.150 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.49, A:K.49, A:Y.148, A:S.150, A:S.150 Water bridges: A:S.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Min, K. et al., Peptidoglycan reshaping by a noncanonical peptidase for helical cell shape in Campylobacter jejuni. Nat Commun (2020)

Release Date

2020-01-15

Peptides

Peptidase M23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidase M23

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