SMTL ID : 6jnl.1

REF6 ZnF2-4-NAC004 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.9, C.14, H.27, H.31 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:C.14, A:H.27, A:H.31 ZN.2: 4 residues within 4Å: Chain A: C.69, C.74, H.87, H.93 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.69, A:C.74, A:H.87, A:H.93 ZN.3: 4 residues within 4Å: Chain A: C.39, C.44, H.57, H.61 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.39, A:C.44, A:H.57, A:H.61

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: C.39, W.41, G.43, C.44 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.39, A:W.41, A:C.44

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain B: T.4, C.5 Chain C: A.9, G.10, A.11 No protein-ligand interaction detected (PLIP)

1 x DA: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE(Non-functional Binders)

DA.6: 3 residues within 4Å: Chain B: T.1, T.2 Chain C: A.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, Q. et al., DNA methylation repels targeting of Arabidopsis REF6. Nat Commun (2019)

Release Date

2019-03-27

Peptides

Lysine-specific demethylase REF6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific demethylase REF6

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