SMTL ID : 6jv2.1

Structure of RyR2 (P/L-Ca2+/Ca2+-CaM dataset)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.4889, I.4891, C.4892, G.4893, H.4914 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.4889, A:C.4892, A:H.4914, A:H.4914 ZN.7: 5 residues within 4Å: Chain C: C.4889, I.4891, C.4892, G.4893, H.4914 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.4889, C:C.4892, C:H.4914, C:H.4914 ZN.13: 5 residues within 4Å: Chain E: C.4889, I.4891, C.4892, G.4893, H.4914 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.4889, E:C.4892, E:H.4914, E:H.4914 ZN.19: 5 residues within 4Å: Chain G: C.4889, I.4891, C.4892, G.4893, H.4914 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.4889, G:C.4892, G:H.4914, G:H.4914

20 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: E.3849, E.3923, T.4932, E.4933, H.4934 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.3849, A:E.3849, A:E.3923, A:T.4932 CA.3: 6 residues within 4Å: Chain B: D.23, D.25, T.27, I.28, T.29, E.32 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.23, B:D.25, B:T.27, B:T.27, B:E.32 CA.4: 7 residues within 4Å: Chain B: D.57, D.59, N.61, T.63, I.64, D.65, E.68 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.59, B:T.63, B:D.65 CA.5: 3 residues within 4Å: Chain B: N.98, S.102, Q.136 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.102 CA.6: 5 residues within 4Å: Chain B: D.134, Q.136, V.137, N.138, E.141 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.134, B:D.134, B:Q.136 CA.8: 5 residues within 4Å: Chain C: E.3849, E.3923, T.4932, E.4933, H.4934 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.3849, C:E.3849, C:E.3923, C:T.4932 CA.9: 6 residues within 4Å: Chain D: D.23, D.25, T.27, I.28, T.29, E.32 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.23, D:D.25, D:T.27, D:T.27, D:E.32 CA.10: 7 residues within 4Å: Chain D: D.57, D.59, N.61, T.63, I.64, D.65, E.68 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.59, D:T.63, D:D.65 CA.11: 3 residues within 4Å: Chain D: N.98, S.102, Q.136 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:S.102 CA.12: 5 residues within 4Å: Chain D: D.134, Q.136, V.137, N.138, E.141 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.134, D:D.134, D:Q.136 CA.14: 5 residues within 4Å: Chain E: E.3849, E.3923, T.4932, E.4933, H.4934 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:E.3849, E:E.3849, E:E.3923, E:T.4932 CA.15: 6 residues within 4Å: Chain F: D.23, D.25, T.27, I.28, T.29, E.32 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.23, F:D.25, F:T.27, F:T.27, F:E.32 CA.16: 7 residues within 4Å: Chain F: D.57, D.59, N.61, T.63, I.64, D.65, E.68 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:D.59, F:T.63, F:D.65 CA.17: 3 residues within 4Å: Chain F: N.98, S.102, Q.136 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:S.102 CA.18: 5 residues within 4Å: Chain F: D.134, Q.136, V.137, N.138, E.141 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:D.134, F:D.134, F:Q.136 CA.20: 5 residues within 4Å: Chain G: E.3849, E.3923, T.4932, E.4933, H.4934 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:E.3849, G:E.3849, G:E.3923, G:T.4932 CA.21: 6 residues within 4Å: Chain H: D.23, D.25, T.27, I.28, T.29, E.32 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:D.23, H:D.25, H:T.27, H:T.27, H:E.32 CA.22: 7 residues within 4Å: Chain H: D.57, D.59, N.61, T.63, I.64, D.65, E.68 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:D.59, H:T.63, H:D.65 CA.23: 3 residues within 4Å: Chain H: N.98, S.102, Q.136 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:S.102 CA.24: 5 residues within 4Å: Chain H: D.134, Q.136, V.137, N.138, E.141 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:D.134, H:D.134, H:Q.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gong, D. et al., Modulation of cardiac ryanodine receptor 2 by calmodulin. Nature (2019)

Release Date

2019-07-17

Peptides

RyR2: ACEG
Calmodulin-1: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

B
B

D
D

F
F

H
H

Membrane

We predict this structure to be a membrane protein.
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RyR2

Calmodulin-1

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