SMTL ID : 6jze.1

Crystal structure of VASH2-SVBP complex with the magic triangle I3C

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

hetero-1-1-mer

Ligands

4 x I3C: 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid(Non-covalent)(Covalent)

I3C.1: 9 residues within 4Å: Chain A: K.89, L.113, S.135, F.136, H.146, H.147, V.148, K.201, K.219 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:F.136, A:F.136, A:H.147 Water bridges: A:K.219, A:K.219 Salt bridges: A:K.89, A:K.89, A:H.146, A:K.201, A:K.219 pi-Stacking: A:H.146 I3C.2: 7 residues within 4Å: Chain A: A.45, K.46, P.47, Q.76 Chain B: Y.62, A.63, R.66 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.76 I3C.3: 1 residues within 4Å: Chain A: R.88 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.88, A:R.88 Salt bridges: A:R.88 I3C.4: 8 residues within 4Å: Chain A: I.12, D.13, S.14, W.17 Chain B: L.53, R.56, Q.57, E.60 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.53 Halogen bonds: B:E.60 Water bridges: A:R.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, C. et al., Structural basis of tubulin detyrosination by VASH2/SVBP heterodimer. Nat Commun (2019)

Release Date

2019-08-07

Peptides

Tubulinyl-Tyr carboxypeptidase 2: A
Small vasohibin-binding protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tubulinyl-Tyr carboxypeptidase 2

Small vasohibin-binding protein

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