SMTL ID : 6jzy.1

Crystal structure of AAR with NADPH and stearyl in complex with ADO binding a long chain carbohydrate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 29 residues within 4Å: Chain A: G.100, F.101, S.103, I.104, N.131, T.134, G.162, T.164, G.165, D.166, I.167, A.188, R.189, N.190, R.193, V.222, A.223, S.224, M.225, G.245, G.246, Y.247, G.265, G.266, F.292, A.293, C.294, R.314 Ligands: OCD.2 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:T.134, A:I.167 Hydrogen bonds: A:N.131, A:T.164, A:T.164, A:D.166, A:I.167, A:R.189, A:N.190, A:A.223, A:S.224, A:S.224, A:Y.247, A:G.266, A:A.293, A:C.294, A:R.314, A:R.314, A:R.314 Water bridges: A:G.168, A:R.193, A:R.193, A:N.250 Salt bridges: A:R.189, A:R.193, A:R.314, A:R.314 pi-Cation interactions: A:R.189

1 x OCD: octadecanal(Covalent)

OCD.2: 16 residues within 4Å: Chain A: G.6, H.7, L.8, V.17, Y.59, E.61, G.99, G.100, Y.247, I.278, A.281, A.282, F.292, C.294, F.295 Ligands: NDP.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.8, A:V.17, A:Y.59, A:Y.59, A:E.61, A:Y.247, A:I.278, A:A.281, A:A.282, A:F.292, A:F.292, A:F.295, A:F.295 Hydrogen bonds: A:G.100

1 x PL3: HEXADECAN-1-OL(Non-covalent)

PL3.3: 19 residues within 4Å: Chain B: I.47, I.50, V.51, G.54, E.55, A.58, E.83, I.137, E.138, F.140, A.141, A.144, Y.145, Y.148, E.167, V.207, M.216 Ligands: FE2.4, FE2.5 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.137, B:F.140, B:F.140, B:A.141, B:Y.145, B:Y.148, B:Y.148, B:V.207

2 x FE2: FE (II) ION(Non-covalent)

FE2.4: 6 residues within 4Å: Chain B: E.55, E.83, H.86, E.167 Ligands: PL3.3, FE2.5 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.55, B:E.55, B:E.83, B:E.167, B:E.167 FE2.5: 6 residues within 4Å: Chain B: E.83, E.138, E.167, H.170 Ligands: PL3.3, FE2.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.83, B:E.138, B:E.138, B:E.167, B:H.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, Y. et al., Structural insights into catalytic mechanism and product delivery of cyanobacterial acyl-acyl carrier protein reductase. Nat Commun (2020)

Release Date

2020-04-01

Peptides

Long-chain acyl-[acyl-carrier-protein] reductase: A
Aldehyde decarbonylase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Long-chain acyl-[acyl-carrier-protein] reductase

Aldehyde decarbonylase

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