SMTL ID : 6k40.2 (5 other biounits)

Crystal structure of alkyl hydroperoxide reductase from D. radiodurans R1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: V.46, W.60, F.64, Y.94, C.95, H.99, T.177, S.181 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.99, A:S.181 GOL.2: 6 residues within 4Å: Chain B: F.64, Y.94, C.95, S.98, H.99, S.181 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.98, B:S.98, B:S.181, B:S.181

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 4 residues within 4Å: Chain B: L.89, N.90, T.140, L.141 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.90 Water bridges: B:R.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, L. et al., Crystal structure of the AhpD-like protein DR1765 from Deinococcus radiodurans R1. Biochem.Biophys.Res.Commun. (2020)

Release Date

2020-05-27

Peptides

Alkyl hydroperoxide reductase AhpD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

Alkyl hydroperoxide reductase AhpD

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