SMTL ID : 6k40.6 (5 other biounits)

Crystal structure of alkyl hydroperoxide reductase from D. radiodurans R1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: V.46, W.60, F.64, Y.94, C.95, S.98, H.99, T.177, S.181 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.50, A:S.98, A:S.181 GOL.3: 9 residues within 4Å: Chain B: V.46, W.60, F.64, Y.94, C.95, S.98, H.99, T.177, S.181 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.98, B:S.181, B:S.181

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 5 residues within 4Å: Chain A: D.23, N.24, A.25, E.27, K.30 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.25, A:E.27, A:K.30

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 3 residues within 4Å: Chain B: N.90, L.141, P.143 2 PLIP interactions: 2 interactions with chain B Water bridges: B:L.89, B:R.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, L. et al., Crystal structure of the AhpD-like protein DR1765 from Deinococcus radiodurans R1. Biochem.Biophys.Res.Commun. (2020)

Release Date

2020-05-27

Peptides

Alkyl hydroperoxide reductase AhpD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

Alkyl hydroperoxide reductase AhpD

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