SMTL ID : 6k4h.1

Crystal structure of the PI5P4Kbeta-AMPPNP complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

3 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 11 residues within 4Å: Chain A: F.116, V.125, R.179, N.180, V.181, F.182, K.191, T.214, L.259, I.345, D.346 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.180, A:V.181, A:K.191, A:K.191 pi-Stacking: A:F.182 ANP.2: 11 residues within 4Å: Chain A: K.53, K.71, K.73, Y.75, S.131, V.134, A.135, H.138, R.165, E.172, Y.174 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.53, A:K.71, A:Y.75, A:R.165 ANP.3: 7 residues within 4Å: Chain B: F.116, V.125, R.179, N.180, V.181, T.214, L.259 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.180, B:V.181 pi-Stacking: B:F.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takeuchi, K. et al., The GTP responsiveness of PI5P4K beta evolved from a compromised trade-off between activity and specificity. Structure (2022)

Release Date

2020-05-27

Peptides

Phosphatidylinositol 5-phosphate 4-kinase type-2 beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphatidylinositol 5-phosphate 4-kinase type-2 beta

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