SMTL ID : 6k7g.1

Cryo-EM structure of the human P4-type flippase ATP8A1-CDC50 (E1 state class1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 7 residues within 4Å: Chain A: W.333 Chain B: N.180, V.234, N.235, L.237, N.298, P.300 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:P.300

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain B: F.103, E.184, N.294 No protein-ligand interaction detected (PLIP) NAG.3: 4 residues within 4Å: Chain B: N.107, I.188, S.192, R.290 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.107, B:S.192, B:R.290, B:R.290

1 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.4: 11 residues within 4Å: Chain A: F.940, I.944, W.947, F.948, A.1051, L.1055 Chain B: F.324, I.327, A.328, A.331, I.335 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:F.324, B:F.324, B:I.327, B:A.328, B:A.331, A:F.940, A:I.944, A:W.947, A:F.948, A:L.1055

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hiraizumi, M. et al., Cryo-EM structures capture the transport cycle of the P4-ATPase flippase. Science (2019)

Release Date

2019-08-28

Peptides

Phospholipid-transporting ATPase: A
Cell cycle control protein 50A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Membrane

We predict this structure to be a membrane protein.
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Phospholipid-transporting ATPase

Cell cycle control protein 50A

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