SMTL ID : 7vsh.1

Cryo-EM structure of a human ATP11C-CDC50A flippase reconstituted in the Nanodisc in E1P state.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 11 residues within 4Å: Chain A: W.316 Chain B: N.176, M.178, N.180, V.234, N.235, W.236, L.237, N.298, Y.299, P.300 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.235

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.402, T.404, D.809, E.830 Ligands: ALF.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.809

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.3: 9 residues within 4Å: Chain A: D.402, T.404, T.667, G.668, K.788, D.809, N.812, D.813 Ligands: MG.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.402

1 x 17F: O-[(S)-({(2R)-2,3-bis[(9Z)-octadec-9-enoyloxy]propyl}oxy)(hydroxy)phosphoryl]-L-serine(Non-covalent)

17F.4: 7 residues within 4Å: Chain A: V.82, A.898, M.903, F.1029, W.1033, L.1041, Q.1043 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.82, A:V.82, A:F.1029, A:W.1033, A:L.1041, A:Q.1043

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain B: F.103, T.105, N.294 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.103 Hydrogen bonds: B:T.105, B:T.105 NAG.6: 4 residues within 4Å: Chain B: P.90, T.105, N.107, R.290 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakanishi, H. et al., Cryo-EM of the ATP11C flippase reconstituted in Nanodiscs shows a distended phospholipid bilayer inner membrane around transmembrane helix 2. J.Biol.Chem. (2022)

Release Date

2021-12-29

Peptides

Phospholipid-transporting ATPase IG: A
Cell cycle control protein 50A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Membrane

We predict this structure to be a membrane protein.
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Phospholipid-transporting ATPase IG

Cell cycle control protein 50A

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