SMTL ID : 6k9y.1 (1 other biounit)

Crystal structure of human VAT-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

4 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 5 residues within 4Å: Chain A: A.185, S.186, K.189, Y.204, K.341 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.186, A:Y.204 Water bridges: A:K.189 NO3.2: 6 residues within 4Å: Chain A: L.52, N.53, N.136, G.164, V.165, K.346 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.136, A:G.164, A:V.165, A:N.343 Water bridges: A:L.52, A:K.346 NO3.3: 4 residues within 4Å: Chain B: A.185, S.186, K.189, K.341 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.186, B:S.186 Water bridges: B:M.160, B:K.189, B:K.189 NO3.4: 8 residues within 4Å: Chain B: L.52, N.53, N.136, G.164, V.165, N.343, G.345, K.346 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.52, B:N.136, B:G.164, B:V.165, B:N.343

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watanabe, Y. et al., Structural basis for interorganelle phospholipid transport mediated by VAT-1. J.Biol.Chem. (2020)

Release Date

2020-02-12

Peptides

Synaptic vesicle membrane protein VAT-1 homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Synaptic vesicle membrane protein VAT-1 homolog

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